PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF072800060CFD_t1
Common NameTRAES_3BF072800060CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 787aa    MW: 89035.3 Da    PI: 10.0579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF072800060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.5e-132092791788
                              E--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3  17 vlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              +l  kfa  h  g  k+++++l+l    ++rsW  kl  r +s++    kGW +F+++n+L+egD ++Fkl +++
  TRAES3BF072800060CFD_t1 209 YLVEKFAGGHpcG--KRRGVELVLLReGKSRSWCTKL--RHSSRGSRVLKGWPSFARDNKLREGDLCLFKLLKSE 279
                              5667788888543..557777777663777*******..66666655556********************88743 PP

2B334.15e-113093891399
                              TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                               + lvlp  f+++ ggk    +t++l+ ++g  ++v +  + + +r++l+ GW  F +an+++e+ +++F++ g+  f   v++f+
  TRAES3BF072800060CFD_t1 309 MHSLVLPDWFVSQLGGKI--WRTIKLQAPDGIIYDVGV--SENMNRIILKFGWAAFLDANEIEENYSLMFRYLGNALF--EVTIFD 388
                              4669*******9999995..559***************..********************************998777..888887 PP

                              S CS
                       B3  99 k 99 
                              +
  TRAES3BF072800060CFD_t1 389 S 389
                              6 PP

3B338.81.7e-127007841999
                              -HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-..TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                       B3  19 pkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt..kGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                                k a+ h   k +++ l+l    ++ sW  k++++ +  ++ ++  kGW  F+++n+L+egD ++Fkl+ + +  ++v++++r+
  TRAES3BF072800060CFD_t1 700 VQKSASGHHRGKSSQVSLVLHReGRSGSWPTKMQHSMQHTTHAMRilKGWTFFARDNRLREGDLCLFKLITNkEPLTMVIHIIRR 784
                              445555563334566778877735569******77555555554455***********************998*********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.691100IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-81102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.105198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-9186IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-7195No hitNo description
Gene3DG3DSA:2.40.330.107.5E-14173281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-12174280IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-12177285No hitNo description
SMARTSM010193.8E-7185290IPR003340B3 DNA binding domain
PfamPF023627.3E-11208279IPR003340B3 DNA binding domain
PROSITE profilePS5086311.42229290IPR003340B3 DNA binding domain
PROSITE profilePS5086310.659297390IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-15299390IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.8E-6300390IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-14304391IPR015300DNA-binding pseudobarrel domain
CDDcd100178.46E-11305388No hitNo description
PfamPF023626.3E-9309389IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-12468577IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-12472582IPR015300DNA-binding pseudobarrel domain
CDDcd100179.03E-11475577No hitNo description
SMARTSM010190.036477580IPR003340B3 DNA binding domain
PROSITE profilePS508637.74477580IPR003340B3 DNA binding domain
PfamPF023622.7E-8478578IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-12660786IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-11661787IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-9666783No hitNo description
SMARTSM010190.016668785IPR003340B3 DNA binding domain
PfamPF023624.9E-10700784IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757717785IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MKKSNVKRHA TLIIHKDYAL EHFPCEDTTA VLQLPGKNKD WKCTFRIRPS GTSDAGRRNL  60
FLYNFACDNH IREGDICLFQ PMTNVKQRRF IVTVHVLDKV NIDHSPGRRT DIGSNHGRKR  120
AKMGAVKDKP HTDEHEVSED SEGAFGRLFM LSDKACPTPA QRKKLLKKVK KIKFKPPFYV  180
AIMSKSTVCQ RGSQNNPMLR FGSQYATRYL VEKFAGGHPC GKRRGVELVL LREGKSRSWC  240
TKLRHSSRGS RVLKGWPSFA RDNKLREGDL CLFKLLKSEE LLDVSKMSNP CECCERKIRF  300
IRKINGNFMH SLVLPDWFVS QLGGKIWRTI KLQAPDGIIY DVGVSENMNR IILKFGWAAF  360
LDANEIEENY SLMFRYLGNA LFEVTIFDSN GKEKALCSRY ADNSSSSQDG VTQSSAGEGS  420
DSGGSQKESL YCYKKSAKMP AVSYSSEEFS GRCYLTEAQK AKVLALVKKI RPEIPVLVVQ  480
MKKSNVEQSG TLVLCKDYAR KHLPCEGTNI ILQLPRKNKG WKCKFHIRPS GTSDAGRRNL  540
SLGNFVPDNH IREGDICLFE PMTIVKEKRF TMTVHLLHKA GIDHSPSART GVGSNHGRTS  600
TKMAGAMEEP PTDGEEYSWE HEEHGVSDDS EGGSEPRFML ADKASLTRAQ EKKVLEKVEE  660
IESEVPLYVA IMSKSNVYRG GGGNTPTLHF GYQYTGRYLV QKSASGHHRG KSSQVSLVLH  720
REGRSGSWPT KMQHSMQHTT HAMRILKGWT FFARDNRLRE GDLCLFKLIT NKEPLTMVIH  780
IIRRKEC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9965230.0HE996523.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58237.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754674.11e-162PREDICTED: B3 domain-containing protein Os03g0620400-like isoform X1
TrEMBLA0A077RTE20.0A0A077RTE2_WHEAT; Uncharacterized protein
STRINGMLOC_54810.21e-133(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-11B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]